PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016229m
Common NameCICLE_v10016229mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 275aa    MW: 31206.3 Da    PI: 5.3849
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016229mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-3079137259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY+ eHnh+
  Ciclev10016229m  79 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSSVDPSMLLITYSCEHNHP 137
                      69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3172139IPR003657WRKY domain
PROSITE profilePS5081132.05373139IPR003657WRKY domain
SuperFamilySSF1182904.84E-2674139IPR003657WRKY domain
SMARTSM007747.5E-3678138IPR003657WRKY domain
PfamPF031066.7E-2680137IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDGRFNSNSN PFTGEQEEND TTPENSSESP PSSSTYNDMM KMTSTSSPKK RRAMQKRVIS  60
VPIKEVEGSR LKGESAPPSD SWAWRKYGQK PIKGSPYPRG YYRCSSSKGC PARKQVERSS  120
VDPSMLLITY SCEHNHPWPL PSTSRNHHHH HHHHHNSKAA KPDRDPEPEP EPEPEPEPEP  180
EHEEKFTDLA DHDNALMTTS ADEFTWFGEM ETTTSTILES PIFADRSQSD CDSLSMFFPM  240
REEDESLFAD LGELPECSMV FRRHRNLGPE VQIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-18791391574WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449542.10.0hypothetical protein CICLE_v10016229mg
SwissprotQ9LP561e-88WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLV4U9Y20.0V4U9Y2_9R
STRINGPOPTR_0011s06990.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53832849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-86WRKY DNA-binding protein 65